The set up was pretty easy and the software I was using was IStopMotion which worked very similar to Framethief so it was an easy learning curve. With some help from some other senior animators the shooting got underway and in two days time I was able to get enough footage to where I never had to do any reshoots. The motion was all capured frame by frame with a camera and I took those and organized them into folders of their scenes. I then brought each individual scene into After Effects and used Keylight to remove as much of the green screen background as possible. I still had some leftover garbage though from green spill and for a couple scenes I had to bring the sequences into Photoshop and erase frame by frame the leftovers that were connected to the character. This was extremely tedious and not really knowing much about keying, maybe there could have been a different way to go but that is the rout I went. I then re-exported out of Photoshop and brought them back into After Effects and animated them from there.
Below are some of the invidiual photos of the shots as well as an initial compostion on the drawn backgrounds:
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